Variant report

Variant	rs7616328
Chromosome Location	chr3:56473119-56473120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs13433818	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433853	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2201058	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55893398	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55946487	0.82[AFR][1000 genomes]
rs56068604	1.00[ASN][1000 genomes]
rs56225742	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56378533	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56902004	1.00[ASN][1000 genomes]
rs57213873	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57784387	1.00[ASN][1000 genomes]
rs58249162	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58600800	1.00[ASN][1000 genomes]
rs58882991	0.82[AFR][1000 genomes]
rs60170546	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60277100	1.00[ASN][1000 genomes]
rs60558675	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60657582	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60983249	1.00[ASN][1000 genomes]
rs61161178	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61435282	1.00[ASN][1000 genomes]
rs6762742	1.00[ASN][1000 genomes]
rs6767143	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6775886	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777491	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778527	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782671	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790421	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790887	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791015	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801302	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72873492	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72873495	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72875303	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72875337	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875352	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875358	1.00[ASN][1000 genomes]
rs72875362	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875366	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73832735	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73832744	0.82[AFR][1000 genomes]
rs7652185	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812094	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9812347	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9813010	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9815821	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9819334	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826041	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826050	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829620	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836290	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9845675	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9851654	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9856215	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9862137	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9863716	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9865182	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9879720	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383044	chr3:56466497-56483664	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3347557	chr3:56466500-56619322	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56456400-56479600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:56457600-56473400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:56458000-56474800	Weak transcription	Fetal Heart	heart
4	chr3:56469000-56479400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:56469000-56481000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:56469000-56492600	Weak transcription	H9 Cell Line	embryonic stem cell

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