Variant report

Variant	rs58882991
Chromosome Location	chr3:56492984-56492985
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56475922..56478879-chr3:56492161..56494889,2	K562	blood:
2	chr3:56491622..56494953-chr3:56496657..56498979,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2201058	0.85[AFR][1000 genomes]
rs55946487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56061339	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57213873	0.88[AFR][1000 genomes]
rs58573955	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775886	0.88[AFR][1000 genomes]
rs6778527	0.85[AFR][1000 genomes]
rs72875337	0.88[AFR][1000 genomes]
rs72875352	0.92[AFR][1000 genomes]
rs72875362	0.88[AFR][1000 genomes]
rs72875366	0.88[AFR][1000 genomes]
rs73832744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616328	0.82[AFR][1000 genomes]
rs9858396	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347557	chr3:56466500-56619322	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56492200-56493200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:56492400-56493200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:56492400-56493200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:56492400-56493400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:56492400-56493400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:56492400-56493800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:56492400-56494000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:56492400-56494200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:56492600-56493200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:56492600-56493200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:56492600-56493200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:56492600-56493400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:56492600-56493600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr3:56492600-56494000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:56492600-56494200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr3:56492600-56494200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:56492600-56494400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:56492600-56494400	Enhancers	Fetal Heart	heart
19	chr3:56492800-56493200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:56492800-56493200	Enhancers	Fetal Muscle Trunk	muscle
21	chr3:56492800-56494200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links