Variant report

Variant	rs58573955
Chromosome Location	chr3:56470443-56470444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2201058	0.81[AFR][1000 genomes]
rs55946487	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56061339	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57213873	0.85[AFR][1000 genomes]
rs58882991	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775886	0.85[AFR][1000 genomes]
rs6778527	0.81[AFR][1000 genomes]
rs72875337	0.85[AFR][1000 genomes]
rs72875352	0.88[AFR][1000 genomes]
rs72875362	0.85[AFR][1000 genomes]
rs72875366	0.85[AFR][1000 genomes]
rs73832744	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9858396	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383044	chr3:56466497-56483664	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3347557	chr3:56466500-56619322	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56456400-56479600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:56457600-56473400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:56458000-56474800	Weak transcription	Fetal Heart	heart
4	chr3:56466400-56471600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:56467200-56473000	Weak transcription	HUVEC	blood vessel
6	chr3:56467600-56470600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:56468800-56471200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:56469000-56470600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:56469000-56471200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:56469000-56471200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:56469000-56471800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:56469000-56471800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:56469000-56472000	Weak transcription	Fetal Brain Female	brain
14	chr3:56469000-56479400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:56469000-56481000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:56469000-56492600	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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