Variant report

Variant	rs56061339
Chromosome Location	chr3:56504772-56504773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55946487	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58573955	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58882991	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72875352	0.82[AFR][1000 genomes]
rs73832744	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9858396	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347557	chr3:56466500-56619322	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56502400-56510800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:56503200-56510600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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