Variant report

Variant	rs7616903
Chromosome Location	chr3:141618833-141618834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:141618648-141619622	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141612451..141614593-chr3:141618463..141620406,2	K562	blood:

Variant related genes	Relation type
ATP1B3	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10755098	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935439	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935440	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935441	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935442	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935443	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11539489	0.97[ASN][1000 genomes]
rs11706195	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11707427	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710245	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11721024	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844	0.84[ASN][1000 genomes]
rs12486398	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12487977	0.82[ASN][1000 genomes]
rs12487983	0.84[ASN][1000 genomes]
rs12490893	0.84[ASN][1000 genomes]
rs12497443	0.84[ASN][1000 genomes]
rs1560411	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16851892	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2115935	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288634	0.86[ASN][1000 genomes]
rs2288635	0.86[ASN][1000 genomes]
rs2288636	0.86[ASN][1000 genomes]
rs2861382	0.99[ASN][1000 genomes]
rs34071952	0.82[ASN][1000 genomes]
rs36038301	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792410	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3792411	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3804772	0.86[ASN][1000 genomes]
rs3804773	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3828398	0.86[ASN][1000 genomes]
rs4683638	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683639	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683640	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683641	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683642	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683643	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683644	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4683646	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683647	0.95[ASN][1000 genomes]
rs4683649	0.84[ASN][1000 genomes]
rs4683651	0.80[ASN][1000 genomes]
rs55945175	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59122181	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7616903	TFDP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141596400-141626400	Weak transcription	Pancreas	Pancrea
2	chr3:141597000-141625200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:141597000-141646400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:141597200-141625800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:141597800-141619000	Weak transcription	Lung	lung
6	chr3:141597800-141627000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:141598000-141619200	Weak transcription	Psoas Muscle	Psoas
8	chr3:141598000-141625400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:141598000-141626000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:141598000-141627000	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:141598000-141627200	Weak transcription	Colonic Mucosa	Colon
12	chr3:141598000-141642000	Weak transcription	Right Ventricle	heart
13	chr3:141598200-141626000	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:141598200-141627200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:141598200-141640200	Weak transcription	Fetal Brain Male	brain
16	chr3:141598200-141640200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:141598400-141622200	Weak transcription	Left Ventricle	heart
18	chr3:141598400-141623800	Weak transcription	NH-A	brain
19	chr3:141600400-141619000	Weak transcription	Fetal Brain Female	brain
20	chr3:141600600-141619400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr3:141600800-141619000	Weak transcription	Adipose Nuclei	Adipose
22	chr3:141600800-141619000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr3:141602400-141619000	Weak transcription	Fetal Stomach	stomach
24	chr3:141605200-141627200	Weak transcription	Primary T cells from cord blood	blood
25	chr3:141606200-141623600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:141606800-141625200	Weak transcription	HSMMtube	muscle
27	chr3:141607200-141623800	Weak transcription	HUVEC	blood vessel
28	chr3:141612600-141619000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr3:141614000-141626000	Weak transcription	Fetal Lung	lung
30	chr3:141614200-141624000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:141614400-141619000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:141614800-141625200	Weak transcription	NHDF-Ad	bronchial
33	chr3:141615000-141619600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
34	chr3:141615000-141622200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:141615600-141619600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
36	chr3:141615800-141619200	ZNF genes & repeats	Dnd41	blood
37	chr3:141615800-141619600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:141615800-141619600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:141615800-141619600	ZNF genes & repeats	GM12878-XiMat	blood
40	chr3:141615800-141619800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
41	chr3:141616200-141619000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:141616200-141623600	Weak transcription	Aorta	Aorta
43	chr3:141616200-141623800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:141616200-141625800	Weak transcription	NHLF	lung
45	chr3:141616200-141627000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr3:141616200-141646600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr3:141616200-141648600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr3:141616400-141622800	Weak transcription	HepG2	liver
49	chr3:141616400-141623800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr3:141616400-141626000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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