Variant report

Variant	rs7617355
Chromosome Location	chr3:24630733-24630734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24562368..24564419-chr3:24630308..24632116,2	MCF-7	breast:
2	chr3:24536512..24538527-chr3:24630331..24633060,2	MCF-7	breast:
3	chr3:24561637..24564260-chr3:24630059..24632291,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000265028	Chromatin interaction
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17014858	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6808838	1.00[ASN][1000 genomes]
rs7628779	1.00[JPT][hapmap]
rs9839648	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24621200-24633400	Weak transcription	K562	blood
2	chr3:24628800-24633000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24629400-24631000	Flanking Active TSS	Fetal Intestine Large	intestine
4	chr3:24629600-24631800	Enhancers	Colon Smooth Muscle	Colon
5	chr3:24629600-24631800	Flanking Active TSS	Fetal Intestine Small	intestine
6	chr3:24629600-24632000	Enhancers	Duodenum Mucosa	Duodenum
7	chr3:24629600-24632000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:24629600-24632200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:24629600-24633600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr3:24629800-24630800	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr3:24629800-24630800	Enhancers	Small Intestine	intestine
12	chr3:24629800-24631000	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr3:24629800-24631000	Enhancers	Fetal Heart	heart
14	chr3:24629800-24631200	Enhancers	Adipose Nuclei	Adipose
15	chr3:24629800-24631400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr3:24629800-24631800	Enhancers	Rectal Smooth Muscle	rectum
17	chr3:24629800-24632000	Enhancers	Fetal Stomach	stomach
18	chr3:24629800-24633200	Enhancers	Fetal Lung	lung
19	chr3:24630000-24631200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:24630000-24632000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:24630000-24632000	Enhancers	Fetal Kidney	kidney
22	chr3:24630200-24630800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr3:24630200-24631000	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr3:24630200-24631000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr3:24630200-24631000	Flanking Active TSS	HUVEC	blood vessel
26	chr3:24630200-24631200	Enhancers	Stomach Smooth Muscle	stomach
27	chr3:24630200-24631600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:24630600-24630800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:24630600-24632800	Weak transcription	Stomach Mucosa	stomach

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