Variant report

Variant	rs7628779
Chromosome Location	chr3:24639602-24639603
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11715809	0.85[EUR][1000 genomes]
rs17014802	1.00[MEX][hapmap]
rs17014855	1.00[TSI][hapmap]
rs17014858	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs17014900	0.83[EUR][1000 genomes]
rs17014902	0.83[EUR][1000 genomes]
rs2043579	0.84[EUR][1000 genomes]
rs2196435	0.84[EUR][1000 genomes]
rs28562279	0.86[EUR][1000 genomes]
rs4858615	1.00[MEX][hapmap]
rs4858618	1.00[MEX][hapmap]
rs56135387	0.84[EUR][1000 genomes]
rs56281969	0.82[EUR][1000 genomes]
rs6791260	1.00[MEX][hapmap]
rs73040465	0.85[EUR][1000 genomes]
rs73040478	0.85[EUR][1000 genomes]
rs73040479	0.85[EUR][1000 genomes]
rs737365	1.00[MEX][hapmap]
rs7617355	1.00[JPT][hapmap]
rs7632924	0.88[GIH][hapmap]
rs9819977	1.00[MEX][hapmap]
rs9830855	0.88[GIH][hapmap]
rs9839648	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24630800-24640800	Weak transcription	Small Intestine	intestine
2	chr3:24632000-24640000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:24633200-24640000	Weak transcription	Fetal Lung	lung
4	chr3:24633600-24640000	Weak transcription	NHDF-Ad	bronchial
5	chr3:24633800-24640200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:24634200-24640000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:24635600-24641400	Enhancers	HMEC	breast
8	chr3:24636000-24640000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:24636000-24640200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:24637000-24641000	Enhancers	NHEK	skin
11	chr3:24637400-24639800	Weak transcription	Stomach Mucosa	stomach
12	chr3:24637800-24640000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:24638600-24640000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:24638600-24640000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:24638800-24639800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:24639000-24639800	Weak transcription	Fetal Intestine Large	intestine
17	chr3:24639400-24640600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr3:24639400-24641400	Enhancers	Hela-S3	cervix
19	chr3:24639600-24639800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:24639600-24639800	Weak transcription	Fetal Intestine Small	intestine
21	chr3:24639600-24640000	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links