Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:24548678..24551507-chr3:24625881..24628494,2	MCF-7	breast:
2	chr3:24535816..24538509-chr3:24621418..24627791,6	MCF-7	breast:
3	chr3:24626677..24627238-chr4:35374435..35375194,2	MCF-7	breast:
4	chr3:24622288..24625025-chr3:24625704..24628070,2	K562	blood:
5	chr3:24619509..24621615-chr3:24625396..24628167,4	K562	blood:
6	chr3:24534559..24538540-chr3:24625678..24628650,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction
ENSG00000151090	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10490837	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11715809	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014900	0.86[EUR][1000 genomes]
rs17014902	0.86[EUR][1000 genomes]
rs2043579	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2117874	0.80[EUR][1000 genomes]
rs2196435	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28562279	0.90[EUR][1000 genomes]
rs55720954	0.94[AFR][1000 genomes]
rs56135387	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56268655	0.91[EUR][1000 genomes]
rs73036489	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73036499	1.00[AFR][1000 genomes]
rs73036501	1.00[AFR][1000 genomes]
rs73038411	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73038427	0.91[EUR][1000 genomes]
rs73040431	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040438	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73040440	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040465	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040478	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040479	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24618000-24629600	Weak transcription	Right Atrium	heart
2	chr3:24621200-24633400	Weak transcription	K562	blood
3	chr3:24621600-24627400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:24624000-24629200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:24625000-24627400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:24625000-24628400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:24625000-24629400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:24625000-24629400	Weak transcription	Psoas Muscle	Psoas
9	chr3:24625000-24630000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:24625200-24629800	Weak transcription	Stomach Mucosa	stomach
11	chr3:24625400-24628200	Weak transcription	Fetal Intestine Small	intestine
12	chr3:24626000-24628400	Weak transcription	Fetal Intestine Large	intestine

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