Variant report

Variant	rs73040438
Chromosome Location	chr3:24619034-24619035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24604131..24605973-chr3:24617844..24619674,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10212332	0.85[ASN][1000 genomes]
rs10490837	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11708042	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11715809	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13318800	0.85[EUR][1000 genomes]
rs17014900	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17014902	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1992040	0.85[EUR][1000 genomes]
rs2043579	0.88[EUR][1000 genomes]
rs2117873	0.85[EUR][1000 genomes]
rs2117874	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2196434	0.86[ASN][1000 genomes]
rs2196435	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2196438	0.85[EUR][1000 genomes]
rs28562279	0.86[EUR][1000 genomes]
rs55720954	0.89[AFR][1000 genomes]
rs56135387	0.88[EUR][1000 genomes]
rs56268655	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56281969	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs58152527	0.87[ASN][1000 genomes]
rs60560161	0.90[ASN][1000 genomes]
rs61701305	0.87[ASN][1000 genomes]
rs6550878	0.87[ASN][1000 genomes]
rs6550879	0.87[ASN][1000 genomes]
rs6767717	0.86[ASN][1000 genomes]
rs6769209	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6770518	0.84[ASN][1000 genomes]
rs6771818	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6781066	0.87[ASN][1000 genomes]
rs6795607	0.81[ASN][1000 genomes]
rs6801494	0.86[ASN][1000 genomes]
rs73036489	0.80[EUR][1000 genomes]
rs73036499	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73036501	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73038411	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73038427	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73040431	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73040440	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73040465	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73040478	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73040479	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7647700	0.85[EUR][1000 genomes]
rs930317	0.86[ASN][1000 genomes]
rs9310745	0.84[EUR][1000 genomes]
rs9819865	0.86[ASN][1000 genomes]
rs9823545	0.85[EUR][1000 genomes]
rs9830859	0.86[ASN][1000 genomes]
rs9835497	0.84[EUR][1000 genomes]
rs9838616	0.85[EUR][1000 genomes]
rs9838720	0.85[EUR][1000 genomes]
rs9843609	0.85[EUR][1000 genomes]
rs9844544	0.85[EUR][1000 genomes]
rs9850781	0.85[EUR][1000 genomes]
rs9853927	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9859978	0.83[ASN][1000 genomes]
rs9861129	0.85[EUR][1000 genomes]
rs9868375	0.86[ASN][1000 genomes]
rs9873830	0.84[EUR][1000 genomes]
rs9878606	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24613400-24620600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:24617800-24623400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:24618000-24629600	Weak transcription	Right Atrium	heart

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