Variant report

Variant	rs61701305
Chromosome Location	chr3:24629191-24629192
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10212332	0.98[ASN][1000 genomes]
rs10490837	0.80[ASN][1000 genomes]
rs11712286	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13318800	0.86[ASN][1000 genomes]
rs1561079	0.91[ASN][1000 genomes]
rs17014900	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17014902	0.80[ASN][1000 genomes]
rs1992040	0.86[ASN][1000 genomes]
rs1992041	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2043578	0.89[EUR][1000 genomes]
rs2117873	0.87[ASN][1000 genomes]
rs2196434	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2196438	0.86[ASN][1000 genomes]
rs28562279	0.92[ASN][1000 genomes]
rs56268655	0.86[ASN][1000 genomes]
rs58152527	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6550878	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6550879	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767534	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6767717	0.99[ASN][1000 genomes]
rs6769209	0.96[ASN][1000 genomes]
rs6770518	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6771818	0.96[ASN][1000 genomes]
rs6781066	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6795607	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6801494	0.99[ASN][1000 genomes]
rs73040438	0.87[ASN][1000 genomes]
rs7647700	0.86[ASN][1000 genomes]
rs930317	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9310745	0.87[ASN][1000 genomes]
rs9819865	0.99[ASN][1000 genomes]
rs9823545	0.86[ASN][1000 genomes]
rs9830859	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9835497	0.87[ASN][1000 genomes]
rs9838616	0.86[ASN][1000 genomes]
rs9838720	0.86[ASN][1000 genomes]
rs9843609	0.84[ASN][1000 genomes]
rs9844544	0.85[ASN][1000 genomes]
rs9850781	0.86[ASN][1000 genomes]
rs9859978	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9861129	0.86[ASN][1000 genomes]
rs9868375	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9873830	0.87[ASN][1000 genomes]
rs9878606	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24618000-24629600	Weak transcription	Right Atrium	heart
2	chr3:24621200-24633400	Weak transcription	K562	blood
3	chr3:24624000-24629200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:24625000-24629400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:24625000-24629400	Weak transcription	Psoas Muscle	Psoas
6	chr3:24625000-24630000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:24625200-24629800	Weak transcription	Stomach Mucosa	stomach
8	chr3:24628200-24629600	Enhancers	Fetal Intestine Small	intestine
9	chr3:24628600-24629400	Weak transcription	Fetal Intestine Large	intestine
10	chr3:24628600-24630000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:24628800-24629800	Weak transcription	Fetal Lung	lung
12	chr3:24628800-24629800	Weak transcription	Left Ventricle	heart
13	chr3:24628800-24629800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:24628800-24633000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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