Variant report

Variant	rs6770518
Chromosome Location	chr3:24613946-24613947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23957479..23960111-chr3:24612993..24615099,2	MCF-7	breast:
2	chr3:24613539..24615668-chr3:24624520..24626771,2	K562	blood:

Variant related genes	Relation type
ENSG00000174748	Chromatin interaction
ENSG00000197885	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10212332	0.93[ASN][1000 genomes]
rs11712286	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13318800	0.86[ASN][1000 genomes]
rs1561079	0.88[ASN][1000 genomes]
rs1992040	0.86[ASN][1000 genomes]
rs1992041	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2043578	0.81[EUR][1000 genomes]
rs2117873	0.87[ASN][1000 genomes]
rs2196434	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2196438	0.86[ASN][1000 genomes]
rs28562279	0.87[ASN][1000 genomes]
rs56268655	0.83[ASN][1000 genomes]
rs58152527	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61701305	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6550878	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6550879	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6767534	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6767717	0.94[ASN][1000 genomes]
rs6769209	0.94[ASN][1000 genomes]
rs6771818	0.99[ASN][1000 genomes]
rs6781066	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6795607	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6801494	0.94[ASN][1000 genomes]
rs73040438	0.84[ASN][1000 genomes]
rs7647700	0.86[ASN][1000 genomes]
rs930317	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9310745	0.87[ASN][1000 genomes]
rs9819865	0.94[ASN][1000 genomes]
rs9823545	0.86[ASN][1000 genomes]
rs9830859	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9835497	0.87[ASN][1000 genomes]
rs9838616	0.86[ASN][1000 genomes]
rs9838720	0.86[ASN][1000 genomes]
rs9843609	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9844544	0.85[ASN][1000 genomes]
rs9850781	0.86[ASN][1000 genomes]
rs9859978	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9861129	0.86[ASN][1000 genomes]
rs9868375	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9873830	0.87[ASN][1000 genomes]
rs9878606	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24613400-24620600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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