Variant report

Variant	rs6781066
Chromosome Location	chr3:24617220-24617221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10212332	0.95[ASN][1000 genomes]
rs10490837	0.93[CHB][hapmap]
rs11712286	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13318800	0.88[ASN][1000 genomes]
rs1561079	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs17014900	0.94[CHB][hapmap]
rs17014902	0.94[CHB][hapmap]
rs1992040	0.94[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1992041	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2043578	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2117873	0.90[ASN][1000 genomes]
rs2196434	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2196438	0.93[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28562279	0.89[ASN][1000 genomes]
rs3919672	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs56268655	0.86[ASN][1000 genomes]
rs58152527	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60560161	0.80[ASN][1000 genomes]
rs61701305	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6550878	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6550879	0.88[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6767534	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6767717	0.96[ASN][1000 genomes]
rs6769209	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6770518	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6771818	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6795607	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6801494	0.96[ASN][1000 genomes]
rs73040438	0.87[ASN][1000 genomes]
rs7647700	0.88[ASN][1000 genomes]
rs930317	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9310745	1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9819865	0.88[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs9823545	0.94[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9830859	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9835497	1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs9838616	0.93[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9838720	0.93[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9843609	0.86[ASN][1000 genomes]
rs9844544	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9850781	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9853927	1.00[CHB][hapmap]
rs9859978	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9861129	0.85[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9868375	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9873830	1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9878606	0.86[CEU][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24613400-24620600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links