Variant report

Variant	rs73036489
Chromosome Location	chr3:24568718-24568719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11715809	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2043579	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2196435	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56135387	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56268655	0.82[EUR][1000 genomes]
rs56281969	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73036499	0.92[EUR][1000 genomes]
rs73036501	0.92[EUR][1000 genomes]
rs73038411	0.82[EUR][1000 genomes]
rs73038427	0.82[EUR][1000 genomes]
rs73040431	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73040438	0.80[EUR][1000 genomes]
rs73040440	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73040465	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73040478	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73040479	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24566200-24591800	Weak transcription	Psoas Muscle	Psoas
2	chr3:24566600-24572000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24567800-24568800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:24568200-24568800	Enhancers	Fetal Lung	lung
5	chr3:24568400-24568800	Weak transcription	Brain Germinal Matrix	brain
6	chr3:24568400-24568800	Enhancers	Colon Smooth Muscle	Colon
7	chr3:24568600-24568800	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr3:24568600-24569200	Enhancers	Fetal Brain Male	brain
9	chr3:24568600-24572600	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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