Variant report

Variant	rs2196435
Chromosome Location	chr3:24624854-24624855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:24623522..24626153-chr3:24655332..24658320,2	MCF-7	breast:
2	chr3:24624597..24625206-chr3:24681892..24683026,3	MCF-7	breast:
3	chr3:24622288..24625025-chr3:24625704..24628070,2	K562	blood:
4	chr3:24535816..24538509-chr3:24621418..24627791,6	MCF-7	breast:
5	chr3:24561126..24562915-chr3:24623177..24625946,2	MCF-7	breast:
6	chr3:24570782..24571363-chr3:24624251..24625134,3	MCF-7	breast:
7	chr3:24535255..24538695-chr3:24622610..24625331,3	K562	blood:
8	chr3:24613539..24615668-chr3:24624520..24626771,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10490837	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11715809	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12489628	1.00[YRI][hapmap]
rs17014900	0.88[EUR][1000 genomes]
rs17014902	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1992040	0.85[CEU][hapmap]
rs2043579	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196438	0.85[CEU][hapmap]
rs28562279	0.88[EUR][1000 genomes]
rs3919672	0.85[CEU][hapmap];0.82[TSI][hapmap]
rs55720954	0.94[AFR][1000 genomes]
rs56135387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56268655	0.89[EUR][1000 genomes]
rs56281969	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73036489	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73036499	1.00[AFR][1000 genomes]
rs73036501	1.00[AFR][1000 genomes]
rs73038411	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73038427	0.89[EUR][1000 genomes]
rs73040431	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040438	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73040440	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040465	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040478	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040479	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9823545	0.85[CEU][hapmap]
rs9830859	0.85[CEU][hapmap]
rs9838616	0.85[CEU][hapmap]
rs9838720	0.85[CEU][hapmap]
rs9853927	0.85[CEU][hapmap]
rs9861129	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24618000-24629600	Weak transcription	Right Atrium	heart
2	chr3:24621200-24633400	Weak transcription	K562	blood
3	chr3:24621600-24627400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:24623400-24625000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:24623400-24625000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:24624000-24629200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:24624200-24625000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:24624200-24625000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:24624200-24625000	Enhancers	Psoas Muscle	Psoas
10	chr3:24624200-24625000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr3:24624400-24625200	Enhancers	Stomach Mucosa	stomach
12	chr3:24624800-24625200	Enhancers	Liver	Liver

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