Variant report

Variant	rs73038411
Chromosome Location	chr3:24576194-24576195
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24575483..24577164-chr3:24577911..24580560,3	K562	blood:
2	chr3:24565232..24567953-chr3:24571653..24576721,4	K562	blood:
3	chr3:24575483..24577164-chr3:24577911..24580259,2	K562	blood:
4	chr3:24561626..24564572-chr3:24575523..24578700,4	K562	blood:
5	chr3:24560064..24565093-chr3:24569358..24577733,9	K562	blood:
6	chr3:24569309..24573994-chr3:24576073..24580821,8	K562	blood:

Variant related genes	Relation type
ENSG00000265028	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10490837	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11708042	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11715809	0.87[EUR][1000 genomes]
rs13318800	0.87[EUR][1000 genomes]
rs17014900	0.92[EUR][1000 genomes]
rs17014902	0.92[EUR][1000 genomes]
rs17029611	0.80[ASN][1000 genomes]
rs1992040	0.87[EUR][1000 genomes]
rs2043579	0.89[EUR][1000 genomes]
rs2117873	0.87[EUR][1000 genomes]
rs2117874	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2164428	0.84[ASN][1000 genomes]
rs2196435	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2196438	0.87[EUR][1000 genomes]
rs28562279	0.88[EUR][1000 genomes]
rs56135387	0.89[EUR][1000 genomes]
rs56268655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56281969	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6769209	0.87[EUR][1000 genomes]
rs6771818	0.87[EUR][1000 genomes]
rs73036489	0.82[EUR][1000 genomes]
rs73036499	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73036501	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73038427	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73040431	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73040438	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73040440	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73040465	0.87[EUR][1000 genomes]
rs73040478	0.87[EUR][1000 genomes]
rs73040479	0.87[EUR][1000 genomes]
rs7647700	0.87[EUR][1000 genomes]
rs9310745	0.86[EUR][1000 genomes]
rs9823545	0.87[EUR][1000 genomes]
rs9835497	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9838616	0.87[EUR][1000 genomes]
rs9838720	0.87[EUR][1000 genomes]
rs9843609	0.87[EUR][1000 genomes]
rs9844544	0.87[EUR][1000 genomes]
rs9850781	0.87[EUR][1000 genomes]
rs9853927	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9861129	0.87[EUR][1000 genomes]
rs9873830	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24566200-24591800	Weak transcription	Psoas Muscle	Psoas
2	chr3:24573400-24576800	Weak transcription	Stomach Mucosa	stomach
3	chr3:24575400-24577600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:24575600-24579800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:24575800-24579600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:24575800-24580600	Weak transcription	Colon Smooth Muscle	Colon

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