Variant report

Variant	rs11708042
Chromosome Location	chr3:24597540-24597541
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NR1D2-5	chr3:24597325-24597950	NONHSAT088702

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10490837	0.83[EUR][1000 genomes]
rs11712286	0.87[ASN][1000 genomes]
rs13318800	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17014900	0.84[EUR][1000 genomes]
rs17014902	0.84[EUR][1000 genomes]
rs17029611	0.91[ASN][1000 genomes]
rs1992040	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1992041	0.87[ASN][1000 genomes]
rs2117873	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2117874	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196438	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28562279	0.81[EUR][1000 genomes]
rs56268655	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6767534	0.86[ASN][1000 genomes]
rs6769209	0.98[EUR][1000 genomes]
rs6771818	0.98[EUR][1000 genomes]
rs73038411	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73038427	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73040438	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7647700	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9310745	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9823545	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9835497	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9838616	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9838720	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9843609	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9844544	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9850781	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9853927	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9861129	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9873830	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24597400-24597800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:24597400-24597800	Enhancers	Placenta	Placenta

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