Variant report

Variant	rs73038427
Chromosome Location	chr3:24580182-24580183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:24578355..24581904-chr3:24581941..24583831,3	K562	blood:
2	chr3:24578355..24580610-chr3:24581968..24585190,3	K562	blood:
3	chr3:24575483..24577164-chr3:24577911..24580259,2	K562	blood:
4	chr3:24565075..24567806-chr3:24579283..24581301,2	K562	blood:
5	chr3:24575483..24577164-chr3:24577911..24580560,3	K562	blood:
6	chr3:24578631..24580678-chr3:24587686..24589577,2	K562	blood:
7	chr3:24578631..24583271-chr3:24586680..24589577,4	K562	blood:
8	chr3:24569309..24573994-chr3:24576073..24580821,8	K562	blood:

No data

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10490837	0.96[EUR][1000 genomes]
rs11708042	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11712286	0.87[ASN][1000 genomes]
rs11715809	0.87[EUR][1000 genomes]
rs13318800	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17014900	0.92[EUR][1000 genomes]
rs17014902	0.92[EUR][1000 genomes]
rs17029611	0.91[ASN][1000 genomes]
rs1992040	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1992041	0.87[ASN][1000 genomes]
rs2043579	0.89[EUR][1000 genomes]
rs2117873	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2117874	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2196435	0.89[EUR][1000 genomes]
rs2196438	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28562279	0.88[EUR][1000 genomes]
rs56135387	0.89[EUR][1000 genomes]
rs56268655	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56281969	0.91[EUR][1000 genomes]
rs6767534	0.84[ASN][1000 genomes]
rs6769209	0.87[EUR][1000 genomes]
rs6771818	0.87[EUR][1000 genomes]
rs73036489	0.82[EUR][1000 genomes]
rs73036499	0.89[EUR][1000 genomes]
rs73036501	0.89[EUR][1000 genomes]
rs73038411	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73040431	0.87[EUR][1000 genomes]
rs73040438	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73040440	0.93[EUR][1000 genomes]
rs73040465	0.87[EUR][1000 genomes]
rs73040478	0.87[EUR][1000 genomes]
rs73040479	0.87[EUR][1000 genomes]
rs7647700	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9310745	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9823545	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9835497	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9838616	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9838720	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9843609	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9844544	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9850781	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9853927	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9861129	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9873830	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24566200-24591800	Weak transcription	Psoas Muscle	Psoas
2	chr3:24575800-24580600	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:24578000-24581600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:24579200-24580800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:24579600-24580600	Enhancers	Fetal Lung	lung
6	chr3:24579600-24580800	Enhancers	Aorta	Aorta
7	chr3:24579600-24580800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:24579600-24581000	Enhancers	Fetal Heart	heart
9	chr3:24579800-24580800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr3:24579800-24580800	Enhancers	Stomach Mucosa	stomach

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