Variant report

Variant	rs73036501
Chromosome Location	chr3:24572270-24572271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24541584..24544034-chr3:24570108..24572918,2	K562	blood:
2	chr3:24565232..24567953-chr3:24571653..24576721,4	K562	blood:
3	chr3:24568396..24570634-chr3:24571106..24573987,2	K562	blood:
4	chr3:24533943..24537246-chr3:24568972..24573245,4	K562	blood:
5	chr3:24569309..24573994-chr3:24576073..24580821,8	K562	blood:
6	chr3:24560064..24565093-chr3:24569358..24577733,9	K562	blood:
7	chr3:24563571..24567419-chr3:24571048..24574200,4	MCF-7	breast:
8	chr3:24566220..24568911-chr3:24571034..24573153,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10490837	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11715809	0.94[AFR][1000 genomes]
rs17014900	0.82[EUR][1000 genomes]
rs17014902	0.82[EUR][1000 genomes]
rs2196435	1.00[AFR][1000 genomes]
rs55720954	0.94[AFR][1000 genomes]
rs56268655	0.89[EUR][1000 genomes]
rs56281969	1.00[AFR][1000 genomes]
rs73036489	0.92[EUR][1000 genomes]
rs73036499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038411	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73038427	0.89[EUR][1000 genomes]
rs73040431	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73040438	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73040440	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73040465	0.94[AFR][1000 genomes]
rs73040478	0.94[AFR][1000 genomes]
rs73040479	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24566200-24591800	Weak transcription	Psoas Muscle	Psoas
2	chr3:24568600-24572600	Weak transcription	Stomach Mucosa	stomach
3	chr3:24568800-24574200	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:24569000-24575200	Weak transcription	Brain Germinal Matrix	brain
5	chr3:24572000-24572400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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