Variant report

Variant	rs2043579
Chromosome Location	chr3:24625546-24625547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10490837	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11715809	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014900	0.88[EUR][1000 genomes]
rs17014902	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2196435	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28562279	0.88[EUR][1000 genomes]
rs56135387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56268655	0.89[EUR][1000 genomes]
rs56281969	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73036489	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73038411	0.89[EUR][1000 genomes]
rs73038427	0.89[EUR][1000 genomes]
rs73040431	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040438	0.88[EUR][1000 genomes]
rs73040440	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040465	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040478	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040479	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24618000-24629600	Weak transcription	Right Atrium	heart
2	chr3:24621200-24633400	Weak transcription	K562	blood
3	chr3:24621600-24627400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:24624000-24629200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:24625000-24627400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:24625000-24628400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:24625000-24629400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:24625000-24629400	Weak transcription	Psoas Muscle	Psoas
9	chr3:24625000-24630000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:24625200-24629800	Weak transcription	Stomach Mucosa	stomach
11	chr3:24625400-24628200	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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