Variant report
Variant | rs2117874 |
---|---|
Chromosome Location | chr3:24600057-24600058 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:6 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:24599129..24600747-chr3:24601001..24605288,3 | K562 | blood: | |
2 | chr3:24588062..24593366-chr3:24599912..24603837,6 | K562 | blood: | |
3 | chr3:24591863..24594583-chr3:24599435..24602083,2 | K562 | blood: | |
4 | chr3:24599960..24602220-chr3:24631656..24634494,2 | K562 | blood: | |
5 | chr3:24598839..24600679-chr3:24603788..24605364,2 | K562 | blood: | |
6 | chr3:24598639..24600629-chr3:24601001..24603431,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10490837 | 0.85[EUR][1000 genomes] |
rs11708042 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11712286 | 0.87[ASN][1000 genomes] |
rs13318800 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs17014900 | 0.81[EUR][1000 genomes] |
rs17014902 | 0.81[EUR][1000 genomes] |
rs17029611 | 0.91[ASN][1000 genomes] |
rs1992040 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1992041 | 0.87[ASN][1000 genomes] |
rs2117873 | 0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs2196438 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs56268655 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs56281969 | 0.80[EUR][1000 genomes] |
rs6767534 | 0.86[ASN][1000 genomes] |
rs6769209 | 0.95[EUR][1000 genomes] |
rs6771818 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs73038411 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs73038427 | 0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs73040438 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs73040440 | 0.82[EUR][1000 genomes] |
rs7647700 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9310745 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9823545 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9835497 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9838616 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9838720 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9843609 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs9844544 | 0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs9850781 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9853927 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9861129 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9873830 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834641 | chr3:24465862-24633738 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
2 | nsv834642 | chr3:24475558-24640593 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
3 | nsv1012975 | chr3:24500706-24615644 | Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
4 | nsv999384 | chr3:24525345-24656873 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:24600000-24601800 | Enhancers | Fetal Brain Male | brain |