Variant report

Variant	rs7632924
Chromosome Location	chr3:24633757-24633758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24315110..24317953-chr3:24633288..24636026,3	MCF-7	breast:
2	chr3:24567024..24569936-chr3:24632741..24634847,2	K562	blood:
3	chr3:24633657..24635628-chr3:24639189..24641484,2	MCF-7	breast:
4	chr3:24631935..24633898-chr3:24636048..24638829,2	MCF-7	breast:
5	chr3:24535097..24538455-chr3:24631744..24636761,7	MCF-7	breast:
6	chr3:24350162..24351776-chr3:24632242..24634979,2	MCF-7	breast:
7	chr3:24599960..24602220-chr3:24631656..24634494,2	K562	blood:

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10212177	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13070554	1.00[CHB][hapmap]
rs13077437	1.00[CHB][hapmap]
rs1473270	0.83[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs1561078	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17014786	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17014834	0.95[EUR][1000 genomes]
rs17014837	1.00[EUR][1000 genomes]
rs17014841	1.00[EUR][1000 genomes]
rs17014858	0.88[GIH][hapmap]
rs1865714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196429	0.94[ASN][1000 genomes]
rs4858117	1.00[CHB][hapmap]
rs56738510	0.95[EUR][1000 genomes]
rs57739688	0.95[EUR][1000 genomes]
rs73141138	1.00[EUR][1000 genomes]
rs73820005	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73820009	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73823363	0.95[EUR][1000 genomes]
rs7628779	0.88[GIH][hapmap]
rs7649819	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7650964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653148	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9830855	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836150	0.94[ASN][1000 genomes]
rs9856426	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24630800-24634200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:24630800-24640800	Weak transcription	Small Intestine	intestine
3	chr3:24631200-24636000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:24631400-24634600	Enhancers	HMEC	breast
5	chr3:24631400-24635200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:24631600-24634200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr3:24631600-24634200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:24631600-24634400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:24631600-24634400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:24631800-24634600	Enhancers	Fetal Intestine Large	intestine
11	chr3:24632000-24636200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:24632000-24637200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:24632000-24640000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:24632200-24635800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:24632200-24637200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr3:24632600-24633800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:24632600-24634200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr3:24632600-24634600	Enhancers	Fetal Intestine Small	intestine
19	chr3:24632800-24633800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:24632800-24634600	Enhancers	Primary hematopoietic stem cells	blood
21	chr3:24633000-24633800	Enhancers	Fetal Brain Male	brain
22	chr3:24633000-24633800	Enhancers	Placenta	Placenta
23	chr3:24633000-24633800	Enhancers	A549	lung
24	chr3:24633000-24634400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:24633000-24634600	Enhancers	Hela-S3	cervix
26	chr3:24633200-24633800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:24633200-24633800	Enhancers	HUVEC	blood vessel
28	chr3:24633200-24640000	Weak transcription	Fetal Lung	lung
29	chr3:24633400-24633800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:24633400-24633800	Enhancers	K562	blood
31	chr3:24633400-24633800	Flanking Active TSS	NHEK	skin
32	chr3:24633600-24633800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr3:24633600-24634000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr3:24633600-24637000	Weak transcription	Stomach Mucosa	stomach
35	chr3:24633600-24640000	Weak transcription	NHDF-Ad	bronchial

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