Variant report

Variant	rs57739688
Chromosome Location	chr3:24621507-24621508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17014786	0.91[EUR][1000 genomes]
rs17014834	0.91[EUR][1000 genomes]
rs17014837	0.95[EUR][1000 genomes]
rs17014841	0.95[EUR][1000 genomes]
rs1865714	0.95[EUR][1000 genomes]
rs56738510	0.91[EUR][1000 genomes]
rs73141138	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73820005	0.95[EUR][1000 genomes]
rs73823363	0.91[EUR][1000 genomes]
rs7632924	0.95[EUR][1000 genomes]
rs7650964	0.82[EUR][1000 genomes]
rs9830855	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24617800-24623400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:24618000-24629600	Weak transcription	Right Atrium	heart
3	chr3:24620400-24621600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:24621200-24623400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:24621200-24623400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:24621200-24624200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:24621200-24624200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr3:24621200-24633400	Weak transcription	K562	blood
9	chr3:24621400-24624200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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