Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10212177	0.94[ASN][1000 genomes]
rs1561078	0.88[ASN][1000 genomes]
rs17014786	0.95[EUR][1000 genomes]
rs17014834	0.95[EUR][1000 genomes]
rs17014837	1.00[EUR][1000 genomes]
rs17014841	1.00[EUR][1000 genomes]
rs1865714	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2196429	0.88[ASN][1000 genomes]
rs56738510	0.95[EUR][1000 genomes]
rs57739688	0.95[EUR][1000 genomes]
rs73141138	1.00[EUR][1000 genomes]
rs73820009	0.94[ASN][1000 genomes]
rs73823363	0.95[EUR][1000 genomes]
rs7632924	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7649819	0.94[ASN][1000 genomes]
rs7650964	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7653148	0.94[ASN][1000 genomes]
rs9830855	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9836150	0.88[ASN][1000 genomes]
rs9856426	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24618000-24629600	Weak transcription	Right Atrium	heart
2	chr3:24621200-24633400	Weak transcription	K562	blood
3	chr3:24625000-24630000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:24625200-24629800	Weak transcription	Stomach Mucosa	stomach
5	chr3:24628200-24629600	Enhancers	Fetal Intestine Small	intestine
6	chr3:24628600-24630000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:24628800-24629800	Weak transcription	Fetal Lung	lung
8	chr3:24628800-24629800	Weak transcription	Left Ventricle	heart
9	chr3:24628800-24629800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:24628800-24633000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:24629200-24630200	Enhancers	Primary hematopoietic stem cells	blood
12	chr3:24629400-24629600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:24629400-24630200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:24629400-24630200	Enhancers	Psoas Muscle	Psoas
15	chr3:24629400-24630200	Enhancers	HUVEC	blood vessel
16	chr3:24629400-24631000	Flanking Active TSS	Fetal Intestine Large	intestine

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