Variant report

Variant	rs9830855
Chromosome Location	chr3:24631719-24631720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24562368..24564419-chr3:24630308..24632116,2	MCF-7	breast:
2	chr3:24536512..24538527-chr3:24630331..24633060,2	MCF-7	breast:
3	chr3:24561637..24564260-chr3:24630059..24632291,3	MCF-7	breast:
4	chr3:24599960..24602220-chr3:24631656..24634494,2	K562	blood:
5	chr3:24631555..24633388-chr8:96154726..96156328,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction
ENSG00000265028	Chromatin interaction
ENSG00000151090	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10212177	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13070554	1.00[CHB][hapmap]
rs13077437	1.00[CHB][hapmap]
rs1473270	0.90[GIH][hapmap];1.00[JPT][hapmap]
rs1561078	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17014786	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17014834	0.95[EUR][1000 genomes]
rs17014837	1.00[EUR][1000 genomes]
rs17014841	1.00[EUR][1000 genomes]
rs17014858	0.88[GIH][hapmap]
rs1865714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196429	0.94[ASN][1000 genomes]
rs4858117	1.00[CHB][hapmap]
rs56738510	0.95[EUR][1000 genomes]
rs57739688	0.95[EUR][1000 genomes]
rs73141138	1.00[EUR][1000 genomes]
rs73820005	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73820009	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73823363	0.95[EUR][1000 genomes]
rs7628779	0.88[GIH][hapmap]
rs7632924	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649819	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7650964	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653148	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9836150	0.94[ASN][1000 genomes]
rs9856426	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24621200-24633400	Weak transcription	K562	blood
2	chr3:24628800-24633000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24629600-24631800	Enhancers	Colon Smooth Muscle	Colon
4	chr3:24629600-24631800	Flanking Active TSS	Fetal Intestine Small	intestine
5	chr3:24629600-24632000	Enhancers	Duodenum Mucosa	Duodenum
6	chr3:24629600-24632000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:24629600-24632200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:24629600-24633600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr3:24629800-24631800	Enhancers	Rectal Smooth Muscle	rectum
10	chr3:24629800-24632000	Enhancers	Fetal Stomach	stomach
11	chr3:24629800-24633200	Enhancers	Fetal Lung	lung
12	chr3:24630000-24632000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:24630000-24632000	Enhancers	Fetal Kidney	kidney
14	chr3:24630600-24632800	Weak transcription	Stomach Mucosa	stomach
15	chr3:24630800-24632000	Enhancers	Brain Germinal Matrix	brain
16	chr3:24630800-24634200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:24630800-24640800	Weak transcription	Small Intestine	intestine
18	chr3:24631000-24631800	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr3:24631000-24632000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:24631000-24632800	Enhancers	HUVEC	blood vessel
21	chr3:24631200-24636000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:24631400-24631800	Flanking Active TSS	Fetal Intestine Large	intestine
23	chr3:24631400-24631800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr3:24631400-24632400	Enhancers	NHDF-Ad	bronchial
25	chr3:24631400-24634600	Enhancers	HMEC	breast
26	chr3:24631400-24635200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr3:24631600-24631800	Flanking Active TSS	Fetal Brain Male	brain
28	chr3:24631600-24632000	Enhancers	Primary hematopoietic stem cells	blood
29	chr3:24631600-24632000	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr3:24631600-24632200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:24631600-24633400	Enhancers	NHEK	skin
32	chr3:24631600-24634200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr3:24631600-24634200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:24631600-24634400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr3:24631600-24634400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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