Variant report

Variant	rs1561078
Chromosome Location	chr3:24642623-24642624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10212177	0.94[ASN][1000 genomes]
rs1473270	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1865714	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2196429	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73820005	0.88[ASN][1000 genomes]
rs73820009	0.94[ASN][1000 genomes]
rs7632924	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7649819	0.94[ASN][1000 genomes]
rs7650964	0.94[ASN][1000 genomes]
rs7653148	0.94[ASN][1000 genomes]
rs9830855	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9836150	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9856426	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24640200-24644200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24640400-24643600	Weak transcription	NHDF-Ad	bronchial
3	chr3:24640400-24645400	Weak transcription	HepG2	liver
4	chr3:24641000-24642800	Weak transcription	Adipose Nuclei	Adipose
5	chr3:24641000-24645600	Weak transcription	Liver	Liver
6	chr3:24641000-24647000	Weak transcription	Small Intestine	intestine
7	chr3:24641400-24645400	Weak transcription	Stomach Mucosa	stomach
8	chr3:24642000-24645200	Weak transcription	Fetal Intestine Large	intestine
9	chr3:24642000-24645200	Weak transcription	Fetal Intestine Small	intestine
10	chr3:24642400-24642800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:24642600-24642800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:24642600-24643200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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