Variant report

Variant	rs17014855
Chromosome Location	chr3:24622397-24622398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24535513..24537264-chr3:24622149..24624564,2	MCF-7	breast:
2	chr3:24622288..24625025-chr3:24625704..24628070,2	K562	blood:
3	chr3:24535816..24538509-chr3:24621418..24627791,6	MCF-7	breast:
4	chr3:24619219..24620800-chr3:24620874..24623733,3	K562	blood:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction
ENSG00000151090	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs17014787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014897	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014918	1.00[EUR][1000 genomes]
rs17014945	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17014965	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3914944	0.82[AFR][1000 genomes]
rs4449259	1.00[EUR][1000 genomes]
rs4858642	1.00[EUR][1000 genomes]
rs55783210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56083972	0.82[AFR][1000 genomes]
rs56087691	1.00[EUR][1000 genomes]
rs56193655	1.00[EUR][1000 genomes]
rs56339532	0.82[AFR][1000 genomes]
rs56382519	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56835827	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57326967	1.00[EUR][1000 genomes]
rs58351306	0.91[AFR][1000 genomes]
rs60595316	1.00[EUR][1000 genomes]
rs61283262	0.82[AFR][1000 genomes]
rs61544851	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820006	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73820018	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820022	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820028	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820035	1.00[EUR][1000 genomes]
rs73820045	1.00[EUR][1000 genomes]
rs73820052	1.00[EUR][1000 genomes]
rs73820053	1.00[EUR][1000 genomes]
rs73820054	1.00[EUR][1000 genomes]
rs73820056	1.00[EUR][1000 genomes]
rs73820058	1.00[EUR][1000 genomes]
rs73823309	0.82[AFR][1000 genomes]
rs73823329	0.82[AFR][1000 genomes]
rs73823334	0.82[AFR][1000 genomes]
rs73823339	0.82[AFR][1000 genomes]
rs73823343	0.82[AFR][1000 genomes]
rs73823345	0.82[AFR][1000 genomes]
rs73823347	0.82[AFR][1000 genomes]
rs73823352	0.82[AFR][1000 genomes]
rs73823368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825636	0.91[AFR][1000 genomes]
rs73825637	0.91[AFR][1000 genomes]
rs73825638	0.91[AFR][1000 genomes]
rs73825639	0.91[AFR][1000 genomes]
rs73826118	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826119	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826120	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73826121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7628779	1.00[TSI][hapmap]
rs7639518	1.00[EUR][1000 genomes]
rs974984	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24617800-24623400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:24618000-24629600	Weak transcription	Right Atrium	heart
3	chr3:24621200-24623400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:24621200-24623400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:24621200-24624200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:24621200-24624200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:24621200-24633400	Weak transcription	K562	blood
8	chr3:24621400-24624200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:24621600-24627400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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