Variant report

Variant	rs73823368
Chromosome Location	chr3:24585221-24585222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24561877..24564685-chr3:24585001..24587984,3	K562	blood:
2	chr3:24584451..24586255-chr3:24614043..24616126,2	K562	blood:

Variant related genes	Relation type
ENSG00000265028	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs17014787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014897	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014918	1.00[EUR][1000 genomes]
rs17014945	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17014965	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3914944	0.82[AFR][1000 genomes]
rs4449259	1.00[EUR][1000 genomes]
rs4858642	1.00[EUR][1000 genomes]
rs55783210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56083972	0.82[AFR][1000 genomes]
rs56193655	1.00[EUR][1000 genomes]
rs56339532	0.82[AFR][1000 genomes]
rs56382519	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56835827	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58351306	0.91[AFR][1000 genomes]
rs60595316	1.00[EUR][1000 genomes]
rs61283262	0.82[AFR][1000 genomes]
rs61544851	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820006	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73820018	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820022	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820028	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820035	1.00[EUR][1000 genomes]
rs73823309	0.82[AFR][1000 genomes]
rs73823329	0.82[AFR][1000 genomes]
rs73823334	0.82[AFR][1000 genomes]
rs73823339	0.82[AFR][1000 genomes]
rs73823343	0.82[AFR][1000 genomes]
rs73823345	0.82[AFR][1000 genomes]
rs73823347	0.82[AFR][1000 genomes]
rs73823352	0.82[AFR][1000 genomes]
rs73823371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825636	0.91[AFR][1000 genomes]
rs73825637	0.91[AFR][1000 genomes]
rs73825638	0.91[AFR][1000 genomes]
rs73825639	0.91[AFR][1000 genomes]
rs73826118	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826119	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826120	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73826121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7639518	1.00[EUR][1000 genomes]
rs974984	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24566200-24591800	Weak transcription	Psoas Muscle	Psoas
2	chr3:24580800-24586400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:24580800-24587200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:24582400-24586200	Weak transcription	Fetal Lung	lung
5	chr3:24582600-24588400	Weak transcription	Colon Smooth Muscle	Colon

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