Variant report

Variant	rs56382519
Chromosome Location	chr3:24569592-24569593
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17014787	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014855	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014897	1.00[AMR][1000 genomes]
rs17014945	0.84[AFR][1000 genomes]
rs17014965	0.84[AFR][1000 genomes]
rs55783210	1.00[AMR][1000 genomes]
rs56835827	1.00[AMR][1000 genomes]
rs73820006	1.00[AMR][1000 genomes]
rs73820018	0.84[AFR][1000 genomes]
rs73820022	0.84[AFR][1000 genomes]
rs73823368	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823371	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826118	1.00[AMR][1000 genomes]
rs73826119	1.00[AMR][1000 genomes]
rs73826120	1.00[AMR][1000 genomes]
rs73826121	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24566200-24591800	Weak transcription	Psoas Muscle	Psoas
2	chr3:24566600-24572000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24568600-24572600	Weak transcription	Stomach Mucosa	stomach
4	chr3:24568800-24574200	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:24569000-24575200	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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