Variant report

Variant	rs17014787
Chromosome Location	chr3:24579077-24579078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24578355..24581904-chr3:24581941..24583831,3	K562	blood:
2	chr3:24578355..24580610-chr3:24581968..24585190,3	K562	blood:
3	chr3:24575483..24577164-chr3:24577911..24580259,2	K562	blood:
4	chr3:24575483..24577164-chr3:24577911..24580560,3	K562	blood:
5	chr3:24578631..24580678-chr3:24587686..24589577,2	K562	blood:
6	chr3:24578631..24583271-chr3:24586680..24589577,4	K562	blood:
7	chr3:24569309..24573994-chr3:24576073..24580821,8	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs17014855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014897	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014918	1.00[EUR][1000 genomes]
rs17014945	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17014965	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3914944	0.82[AFR][1000 genomes]
rs4449259	1.00[EUR][1000 genomes]
rs55783210	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56083972	0.82[AFR][1000 genomes]
rs56193655	1.00[EUR][1000 genomes]
rs56339532	0.82[AFR][1000 genomes]
rs56382519	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56835827	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58351306	0.91[AFR][1000 genomes]
rs61283262	0.82[AFR][1000 genomes]
rs61544851	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820006	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73820018	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820022	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820028	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73823309	0.82[AFR][1000 genomes]
rs73823329	0.82[AFR][1000 genomes]
rs73823334	0.82[AFR][1000 genomes]
rs73823339	0.82[AFR][1000 genomes]
rs73823343	0.82[AFR][1000 genomes]
rs73823345	0.82[AFR][1000 genomes]
rs73823347	0.82[AFR][1000 genomes]
rs73823352	0.82[AFR][1000 genomes]
rs73823368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73823371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825636	0.91[AFR][1000 genomes]
rs73825637	0.91[AFR][1000 genomes]
rs73825638	0.91[AFR][1000 genomes]
rs73825639	0.91[AFR][1000 genomes]
rs73826118	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826119	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826120	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73826121	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs974984	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	esv3379672	chr3:24578923-24579126	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24566200-24591800	Weak transcription	Psoas Muscle	Psoas
2	chr3:24575600-24579800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:24575800-24579600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:24575800-24580600	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:24577200-24579800	Weak transcription	Stomach Mucosa	stomach
6	chr3:24578000-24581600	Weak transcription	Rectal Smooth Muscle	rectum

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