Variant report

Variant	rs73823352
Chromosome Location	chr3:24557956-24557957
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17014787	0.82[AFR][1000 genomes]
rs17014855	0.82[AFR][1000 genomes]
rs17014945	0.82[AFR][1000 genomes]
rs17014965	0.82[AFR][1000 genomes]
rs3914944	1.00[AFR][1000 genomes]
rs56083972	1.00[AFR][1000 genomes]
rs56339532	1.00[AFR][1000 genomes]
rs58351306	0.91[AFR][1000 genomes]
rs61283262	1.00[AFR][1000 genomes]
rs73820018	0.82[AFR][1000 genomes]
rs73820022	0.82[AFR][1000 genomes]
rs73823309	1.00[AFR][1000 genomes]
rs73823310	0.91[AFR][1000 genomes]
rs73823329	1.00[AFR][1000 genomes]
rs73823334	1.00[AFR][1000 genomes]
rs73823339	1.00[AFR][1000 genomes]
rs73823343	1.00[AFR][1000 genomes]
rs73823345	1.00[AFR][1000 genomes]
rs73823347	1.00[AFR][1000 genomes]
rs73823368	0.82[AFR][1000 genomes]
rs73823371	0.82[AFR][1000 genomes]
rs73825636	0.91[AFR][1000 genomes]
rs73825637	0.91[AFR][1000 genomes]
rs73825638	0.91[AFR][1000 genomes]
rs73825639	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24538200-24560600	Weak transcription	Aorta	Aorta
2	chr3:24539000-24560200	Weak transcription	HepG2	liver
3	chr3:24550600-24560800	Weak transcription	NHDF-Ad	bronchial
4	chr3:24552200-24558000	Weak transcription	K562	blood
5	chr3:24552200-24560600	Weak transcription	Fetal Intestine Small	intestine
6	chr3:24555800-24560600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:24556000-24560600	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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