Variant report

Variant	rs17014965
Chromosome Location	chr3:24656088-24656089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24654929..24659787-chr3:24660015..24665677,5	K562	blood:
2	chr3:24623522..24626153-chr3:24655332..24658320,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs17014787	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17014855	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17014897	0.91[AFR][1000 genomes]
rs17014918	1.00[EUR][1000 genomes]
rs17014945	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3914944	0.82[AFR][1000 genomes]
rs4449259	1.00[EUR][1000 genomes]
rs4858642	1.00[EUR][1000 genomes]
rs55783210	0.91[AFR][1000 genomes]
rs56083972	0.82[AFR][1000 genomes]
rs56087691	1.00[EUR][1000 genomes]
rs56193655	1.00[EUR][1000 genomes]
rs56339532	0.82[AFR][1000 genomes]
rs56382519	0.84[AFR][1000 genomes]
rs56835827	0.91[AFR][1000 genomes]
rs57326967	1.00[EUR][1000 genomes]
rs58351306	0.91[AFR][1000 genomes]
rs60595316	1.00[EUR][1000 genomes]
rs61283262	0.82[AFR][1000 genomes]
rs61544851	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820006	0.91[AFR][1000 genomes]
rs73820018	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820022	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820028	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820035	1.00[EUR][1000 genomes]
rs73820045	1.00[EUR][1000 genomes]
rs73820052	1.00[EUR][1000 genomes]
rs73820053	1.00[EUR][1000 genomes]
rs73820054	1.00[EUR][1000 genomes]
rs73820056	1.00[EUR][1000 genomes]
rs73820058	1.00[EUR][1000 genomes]
rs73820068	1.00[EUR][1000 genomes]
rs73823309	0.82[AFR][1000 genomes]
rs73823329	0.82[AFR][1000 genomes]
rs73823334	0.82[AFR][1000 genomes]
rs73823339	0.82[AFR][1000 genomes]
rs73823343	0.82[AFR][1000 genomes]
rs73823345	0.82[AFR][1000 genomes]
rs73823347	0.82[AFR][1000 genomes]
rs73823352	0.82[AFR][1000 genomes]
rs73823368	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73823371	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73826118	0.91[AFR][1000 genomes]
rs73826119	0.91[AFR][1000 genomes]
rs73826120	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73826121	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7639518	1.00[EUR][1000 genomes]
rs974984	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24654200-24656400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:24654800-24659400	Enhancers	Fetal Intestine Large	intestine
3	chr3:24655200-24659400	Enhancers	Fetal Intestine Small	intestine
4	chr3:24655400-24656400	Enhancers	NHDF-Ad	bronchial
5	chr3:24656000-24656400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:24656000-24656600	Enhancers	Stomach Mucosa	stomach

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