Variant report

Variant	rs73820028
Chromosome Location	chr3:24693517-24693518
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17014787	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17014855	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17014897	0.84[AFR][1000 genomes]
rs17014918	1.00[EUR][1000 genomes]
rs17014945	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17014965	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4449259	1.00[EUR][1000 genomes]
rs4858642	1.00[EUR][1000 genomes]
rs55783210	0.84[AFR][1000 genomes]
rs56087691	1.00[EUR][1000 genomes]
rs56193655	1.00[EUR][1000 genomes]
rs56835827	0.84[AFR][1000 genomes]
rs57326967	1.00[EUR][1000 genomes]
rs60595316	1.00[EUR][1000 genomes]
rs61544851	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820006	0.84[AFR][1000 genomes]
rs73820018	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820022	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73820035	1.00[EUR][1000 genomes]
rs73820045	1.00[EUR][1000 genomes]
rs73820052	1.00[EUR][1000 genomes]
rs73820053	1.00[EUR][1000 genomes]
rs73820054	1.00[EUR][1000 genomes]
rs73820056	1.00[EUR][1000 genomes]
rs73820058	1.00[EUR][1000 genomes]
rs73820068	1.00[EUR][1000 genomes]
rs73823368	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73823371	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73826118	0.84[AFR][1000 genomes]
rs73826119	0.84[AFR][1000 genomes]
rs73826120	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73826121	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7639518	1.00[EUR][1000 genomes]
rs974984	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1005314	chr3:24690692-24813960	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24683600-24694800	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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