Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:24535513..24537264-chr3:24622149..24624564,2	MCF-7	breast:
2	chr3:24623522..24626153-chr3:24655332..24658320,2	MCF-7	breast:
3	chr3:24622288..24625025-chr3:24625704..24628070,2	K562	blood:
4	chr3:24535816..24538509-chr3:24621418..24627791,6	MCF-7	breast:
5	chr3:24561126..24562915-chr3:24623177..24625946,2	MCF-7	breast:
6	chr3:24305304..24306760-chr3:24623707..24624748,5	MCF-7	breast:
7	chr3:24535255..24538695-chr3:24622610..24625331,3	K562	blood:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction
ENSG00000151090	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17014787	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014855	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014945	0.91[AFR][1000 genomes]
rs17014965	0.91[AFR][1000 genomes]
rs55783210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56382519	1.00[AMR][1000 genomes]
rs56835827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58351306	0.83[AFR][1000 genomes]
rs61544851	0.84[AFR][1000 genomes]
rs73820006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73820011	1.00[EUR][1000 genomes]
rs73820018	0.91[AFR][1000 genomes]
rs73820022	0.91[AFR][1000 genomes]
rs73820028	0.84[AFR][1000 genomes]
rs73823368	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823371	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825636	0.83[AFR][1000 genomes]
rs73825637	0.83[AFR][1000 genomes]
rs73825638	0.83[AFR][1000 genomes]
rs73825639	0.83[AFR][1000 genomes]
rs73826119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73826120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9833428	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24618000-24629600	Weak transcription	Right Atrium	heart
2	chr3:24621200-24624200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:24621200-24624200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:24621200-24633400	Weak transcription	K562	blood
5	chr3:24621400-24624200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:24621600-24627400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:24623400-24624000	Enhancers	Primary hematopoietic stem cells	blood
8	chr3:24623400-24625000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:24623400-24625000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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