Variant report

Variant	rs56835827
Chromosome Location	chr3:24640004-24640005
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24639170..24642285-chr3:24644377..24647650,4	K562	blood:
2	chr3:24633657..24635628-chr3:24639189..24641484,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17014787	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014855	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17014897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014945	0.91[AFR][1000 genomes]
rs17014965	0.91[AFR][1000 genomes]
rs55783210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56382519	1.00[AMR][1000 genomes]
rs58351306	0.83[AFR][1000 genomes]
rs61544851	0.84[AFR][1000 genomes]
rs73820006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73820011	1.00[EUR][1000 genomes]
rs73820018	0.91[AFR][1000 genomes]
rs73820022	0.91[AFR][1000 genomes]
rs73820028	0.84[AFR][1000 genomes]
rs73823368	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73823371	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825636	0.83[AFR][1000 genomes]
rs73825637	0.83[AFR][1000 genomes]
rs73825638	0.83[AFR][1000 genomes]
rs73825639	0.83[AFR][1000 genomes]
rs73826118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73826119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73826120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73826121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9833428	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24630800-24640800	Weak transcription	Small Intestine	intestine
2	chr3:24633800-24640200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:24635600-24641400	Enhancers	HMEC	breast
4	chr3:24636000-24640200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:24637000-24641000	Enhancers	NHEK	skin
6	chr3:24639400-24640600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:24639400-24641400	Enhancers	Hela-S3	cervix
8	chr3:24639800-24640200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:24639800-24640800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:24639800-24641200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:24639800-24641400	Enhancers	Stomach Mucosa	stomach
12	chr3:24639800-24642000	Enhancers	Fetal Intestine Large	intestine
13	chr3:24639800-24642000	Enhancers	Fetal Intestine Small	intestine
14	chr3:24640000-24640200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:24640000-24640200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:24640000-24640200	Enhancers	Liver	Liver
17	chr3:24640000-24640400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr3:24640000-24640400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:24640000-24640400	Enhancers	HepG2	liver
20	chr3:24640000-24640400	Flanking Active TSS	HUVEC	blood vessel
21	chr3:24640000-24640400	Enhancers	NHDF-Ad	bronchial
22	chr3:24640000-24640600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr3:24640000-24640600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:24640000-24640600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:24640000-24640800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:24640000-24640800	Enhancers	A549	lung
27	chr3:24640000-24641000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr3:24640000-24641200	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr3:24640000-24641200	Enhancers	Duodenum Mucosa	Duodenum
30	chr3:24640000-24641200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr3:24640000-24642600	Enhancers	Fetal Lung	lung

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