Variant report

Variant	rs56087691
Chromosome Location	chr3:24775918-24775919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24766490..24768818-chr3:24773482..24775957,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17014855	1.00[EUR][1000 genomes]
rs17014918	1.00[EUR][1000 genomes]
rs17014945	1.00[EUR][1000 genomes]
rs17014965	1.00[EUR][1000 genomes]
rs4449259	1.00[EUR][1000 genomes]
rs4858642	1.00[EUR][1000 genomes]
rs56193655	1.00[EUR][1000 genomes]
rs57326967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60595316	1.00[EUR][1000 genomes]
rs61544851	1.00[EUR][1000 genomes]
rs73820018	1.00[EUR][1000 genomes]
rs73820022	1.00[EUR][1000 genomes]
rs73820028	1.00[EUR][1000 genomes]
rs73820035	1.00[EUR][1000 genomes]
rs73820045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73820052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73820053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73820054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73820056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73820058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73820068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73826120	1.00[EUR][1000 genomes]
rs73826121	1.00[EUR][1000 genomes]
rs7639518	1.00[EUR][1000 genomes]
rs974984	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1005314	chr3:24690692-24813960	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv589950	chr3:24694021-24816974	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2756981	chr3:24725003-24813960	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv876627	chr3:24744504-24824302	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv34635	chr3:24746296-24813960	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv460480	chr3:24746378-24816974	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv470527	chr3:24746378-24816974	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv589951	chr3:24746378-24816974	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv460481	chr3:24773695-24813960	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv589952	chr3:24773695-24813960	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24775200-24776000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24775400-24776000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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