Variant report

Variant	rs7618315
Chromosome Location	chr3:54376948-54376949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11130416	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130417	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4928040	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6445645	0.90[EUR][1000 genomes]
rs6445648	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6784315	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6810202	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7427630	0.89[EUR][1000 genomes]
rs7429094	0.85[EUR][1000 genomes]
rs7431577	0.90[EUR][1000 genomes]
rs7434239	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7627905	0.88[EUR][1000 genomes]
rs7634811	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7652209	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9683195	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9818348	0.82[ASN][1000 genomes]
rs9849660	0.90[EUR][1000 genomes]
rs9879885	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv817210	chr3:54365684-54511164	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54368000-54378200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:54370600-54378200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:54375600-54380000	Weak transcription	Spleen	Spleen
4	chr3:54375600-54382000	Weak transcription	Hela-S3	cervix
5	chr3:54376400-54377000	Enhancers	Pancreas	Pancrea
6	chr3:54376400-54377000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr3:54376400-54377800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:54376600-54377600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:54376800-54377000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:54376800-54377000	Enhancers	Left Ventricle	heart
11	chr3:54376800-54377200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:54376800-54377200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:54376800-54377200	Enhancers	Fetal Muscle Trunk	muscle
14	chr3:54376800-54377200	Enhancers	Ovary	ovary
15	chr3:54376800-54378000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:54376800-54379800	Enhancers	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links