Variant report

Variant	rs761842
Chromosome Location	chr6:127620870-127620871
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr6:127620665-127620961	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:127620279..127622544-chr6:127624059..127626333,2	K562	blood:

Variant related genes	Relation type
ECHDC1	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12175928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2073298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4141423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6569484	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6569485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6912878	0.84[AFR][1000 genomes]
rs6915597	0.84[AFR][1000 genomes]
rs6936084	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6936621	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6936813	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6938872	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6941233	0.83[ASN][1000 genomes]
rs7764180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs877102	0.82[JPT][hapmap]
rs9321072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9372861	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9372862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9372863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9372866	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9375493	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9375498	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9375500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375505	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9385420	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9388557	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9388558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9388559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9388560	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9388562	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9388565	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9388570	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9398843	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9398844	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9401939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9401945	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401947	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9401948	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9401949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9401954	0.84[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127601600-127621800	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr6:127605000-127660800	Weak transcription	Hela-S3	cervix
3	chr6:127608600-127625000	Weak transcription	Colonic Mucosa	Colon
4	chr6:127608800-127621000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:127608800-127621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:127608800-127621800	Weak transcription	Fetal Stomach	stomach
7	chr6:127608800-127628000	Weak transcription	Spleen	Spleen
8	chr6:127608800-127633400	Weak transcription	Fetal Kidney	kidney
9	chr6:127608800-127634400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:127608800-127635200	Weak transcription	K562	blood
11	chr6:127608800-127646800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:127608800-127646800	Weak transcription	Lung	lung
13	chr6:127608800-127652800	Weak transcription	Esophagus	oesophagus
14	chr6:127608800-127653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:127608800-127653600	Weak transcription	Pancreas	Pancrea
16	chr6:127608800-127654600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:127608800-127661400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:127608800-127663600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:127608800-127663600	Weak transcription	Gastric	stomach
20	chr6:127609000-127621400	Weak transcription	Fetal Heart	heart
21	chr6:127609000-127621600	Weak transcription	Fetal Brain Male	brain
22	chr6:127609000-127621600	Weak transcription	Right Ventricle	heart
23	chr6:127609000-127624800	Weak transcription	Thymus	Thymus
24	chr6:127609000-127630600	Weak transcription	Ovary	ovary
25	chr6:127609000-127646200	Weak transcription	Psoas Muscle	Psoas
26	chr6:127609200-127621400	Weak transcription	Fetal Brain Female	brain
27	chr6:127609200-127621600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:127610400-127621000	Weak transcription	NHLF	lung
29	chr6:127610400-127633400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:127610600-127624600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:127610800-127627200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:127611200-127621200	Weak transcription	NHEK	skin
33	chr6:127611200-127627400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:127611400-127621000	Weak transcription	HUVEC	blood vessel
35	chr6:127611400-127621400	Weak transcription	Placenta	Placenta
36	chr6:127611400-127645600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:127611600-127624600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr6:127612000-127627400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:127612200-127621200	Weak transcription	A549	lung
40	chr6:127612200-127621600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr6:127612200-127637600	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:127612400-127621200	Weak transcription	HMEC	breast
43	chr6:127612600-127621400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:127612600-127621400	Weak transcription	HSMMtube	muscle
45	chr6:127612600-127629000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:127612800-127629000	Weak transcription	Brain Anterior Caudate	brain
47	chr6:127612800-127630800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:127613000-127621600	Weak transcription	Aorta	Aorta
49	chr6:127613000-127624400	Weak transcription	Adipose Nuclei	Adipose
50	chr6:127613000-127634600	Weak transcription	Stomach Mucosa	stomach

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