Variant report

Variant	rs9401949
Chromosome Location	chr6:127651116-127651117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:127644823..127649108-chr6:127649244..127652303,4	K562	blood:
2	chr6:127650361..127651894-chr6:127664162..127665757,2	MCF-7	breast:
3	chr6:127649642..127651388-chr6:127662419..127666055,3	K562	blood:
4	chr6:127646597..127649451-chr6:127650225..127654504,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000093144	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12175928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2073298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4141423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569484	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6569485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6912878	0.84[AFR][1000 genomes]
rs6915597	0.84[AFR][1000 genomes]
rs6936084	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936621	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938872	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6941233	0.84[ASN][1000 genomes]
rs761842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7764180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs877102	0.82[JPT][hapmap]
rs9321072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9372861	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9372862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9372863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9372865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372866	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9375493	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9375498	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9375500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375502	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375505	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9385420	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9388557	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9388558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9388559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9388560	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9388562	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9388565	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9388570	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9398843	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9398844	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9401939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9401945	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9401947	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9401948	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401954	0.85[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127605000-127660800	Weak transcription	Hela-S3	cervix
2	chr6:127608800-127652800	Weak transcription	Esophagus	oesophagus
3	chr6:127608800-127653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:127608800-127653600	Weak transcription	Pancreas	Pancrea
5	chr6:127608800-127654600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:127608800-127661400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:127608800-127663600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:127608800-127663600	Weak transcription	Gastric	stomach
9	chr6:127613000-127661000	Weak transcription	Small Intestine	intestine
10	chr6:127614600-127659200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:127621800-127661000	Weak transcription	Fetal Heart	heart
12	chr6:127622000-127661400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:127622000-127661400	Weak transcription	NHEK	skin
14	chr6:127622800-127661400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:127622800-127662600	Weak transcription	Fetal Brain Male	brain
16	chr6:127625600-127661400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:127627400-127659000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:127628000-127653000	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:127629800-127661200	Weak transcription	A549	lung
20	chr6:127631000-127651400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:127632400-127657600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:127634000-127652200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:127634800-127661400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:127635000-127658000	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:127635400-127653600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:127635800-127659200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:127639000-127652400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:127639600-127652000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr6:127641000-127654000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:127643400-127654200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:127644600-127652200	Strong transcription	HepG2	liver
32	chr6:127644800-127652000	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:127645400-127661400	Weak transcription	Right Ventricle	heart
34	chr6:127645800-127661000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:127646600-127660200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:127647400-127653800	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:127647600-127653400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr6:127647600-127653600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:127647600-127654000	Weak transcription	Lung	lung
40	chr6:127647600-127654800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:127647600-127660200	Weak transcription	HSMMtube	muscle
42	chr6:127647600-127661000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:127647600-127661400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:127647600-127661400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:127647600-127661600	Weak transcription	Brain Germinal Matrix	brain
46	chr6:127647600-127661600	Weak transcription	Fetal Intestine Small	intestine
47	chr6:127647600-127662600	Weak transcription	Brain Angular Gyrus	brain
48	chr6:127647600-127662800	Weak transcription	Fetal Stomach	stomach
49	chr6:127647600-127662800	Weak transcription	Thymus	Thymus
50	chr6:127647600-127663000	Weak transcription	Brain Cingulate Gyrus	brain

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