Variant report

Variant	rs761897
Chromosome Location	chr14:69471839-69471840
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69443805..69447770-chr14:69468960..69472482,4	MCF-7	breast:
2	chr14:69378536..69380644-chr14:69471765..69473776,2	MCF-7	breast:
3	chr14:69390106..69392207-chr14:69470641..69472372,2	MCF-7	breast:
4	chr14:69468155..69470465-chr14:69471186..69473810,2	MCF-7	breast:
5	chr14:69463487..69465759-chr14:69469835..69471867,2	MCF-7	breast:
6	chr14:69471670..69474001-chr14:69555320..69558312,2	MCF-7	breast:
7	chr14:69458865..69460380-chr14:69470355..69472352,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259062	Chromatin interaction
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1275195	0.89[JPT][hapmap]
rs12884238	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs173321	0.89[JPT][hapmap]
rs242105	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs761897	WDR22	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69469000-69472000	Weak transcription	Placenta	Placenta
2	chr14:69469800-69473000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:69470800-69473000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:69470800-69473200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr14:69471000-69472800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr14:69471000-69473200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:69471000-69473400	Enhancers	Fetal Muscle Trunk	muscle
8	chr14:69471000-69473600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:69471200-69472000	Enhancers	HMEC	breast
10	chr14:69471200-69472800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr14:69471200-69473000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:69471200-69473000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr14:69471200-69473000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:69471200-69473000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:69471200-69473000	Enhancers	Stomach Smooth Muscle	stomach
16	chr14:69471200-69473000	Enhancers	NHLF	lung
17	chr14:69471200-69473200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr14:69471200-69473200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:69471200-69473200	Enhancers	NHDF-Ad	bronchial
20	chr14:69471200-69473800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:69471200-69473800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:69471400-69472000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:69471400-69472400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:69471400-69472400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr14:69471400-69472800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr14:69471400-69472800	Enhancers	Esophagus	oesophagus
27	chr14:69471400-69472800	Enhancers	Fetal Muscle Leg	muscle
28	chr14:69471400-69473000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:69471400-69473200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr14:69471400-69473200	Enhancers	Aorta	Aorta
31	chr14:69471400-69473200	Enhancers	HUVEC	blood vessel
32	chr14:69471600-69472000	Enhancers	NHEK	skin
33	chr14:69471600-69472000	Enhancers	Osteobl	bone
34	chr14:69471600-69472200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr14:69471600-69472200	Enhancers	A549	lung
36	chr14:69471600-69472200	Enhancers	Hela-S3	cervix
37	chr14:69471600-69472400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr14:69471600-69472600	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr14:69471600-69472600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr14:69471600-69472600	Flanking Active TSS	NH-A	brain
41	chr14:69471600-69472800	Enhancers	H9 Cell Line	embryonic stem cell
42	chr14:69471600-69472800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr14:69471600-69472800	Enhancers	Brain Germinal Matrix	brain
44	chr14:69471600-69472800	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr14:69471600-69473000	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr14:69471600-69473000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr14:69471600-69473000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr14:69471600-69473000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:69471600-69473000	Enhancers	Muscle Satellite Cultured Cells	--
50	chr14:69471600-69473000	Enhancers	Rectal Smooth Muscle	rectum

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