Variant report

Variant	rs242105
Chromosome Location	chr14:69459229-69459230
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1275195	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs12884238	1.00[MEX][hapmap];0.89[AMR][1000 genomes]
rs173321	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs1884633	1.00[MEX][hapmap]
rs1884634	1.00[MEX][hapmap]
rs2012820	0.85[CEU][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs242092	0.80[ASN][1000 genomes]
rs242103	0.98[ASN][1000 genomes]
rs242106	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs242108	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4902684	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs68006628	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7140680	1.00[JPT][hapmap]
rs761897	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69447000-69471400	Weak transcription	Esophagus	oesophagus
2	chr14:69453400-69460600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:69454800-69461200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr14:69455600-69465200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:69456000-69464400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:69456000-69471200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:69459000-69459400	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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