Variant report

Variant	rs76201598
Chromosome Location	chr6:88033000-88033001
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:88031453-88033043	SK-N-SH	brain:	n/a	n/a
2	REST	chr6:88032017-88033058	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:88030655..88033234-chr6:88038071..88039593,2	MCF-7	breast:
2	chr6:88031398..88035229-chr6:88037396..88042297,5	MCF-7	breast:
3	chr6:87864467..87866478-chr6:88032306..88034676,2	K562	blood:
4	chr6:88032389..88034079-chr6:88038245..88041213,2	K562	blood:

Variant related genes	Relation type
GJB7	TF binding region
ENSG00000188994	Chromatin interaction
ENSG00000272008	Chromatin interaction
ENSG00000164411	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823771	chr6:88032762-88039447	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:146 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88031600-88033000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:88031600-88033000	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr6:88031600-88033000	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr6:88031600-88033000	Active TSS	Psoas Muscle	Psoas
5	chr6:88031600-88033000	Active TSS	GM12878-XiMat	blood
6	chr6:88031600-88033200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:88031600-88033200	Active TSS	Brain Anterior Caudate	brain
8	chr6:88031600-88033200	Active TSS	Colonic Mucosa	Colon
9	chr6:88031600-88033200	Active TSS	Fetal Brain Female	brain
10	chr6:88031600-88033200	Active TSS	Fetal Muscle Trunk	muscle
11	chr6:88031800-88033000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:88031800-88033000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:88031800-88033000	Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr6:88031800-88033000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:88031800-88033000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:88031800-88033000	Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr6:88031800-88033000	Active TSS	Aorta	Aorta
18	chr6:88031800-88033000	Active TSS	Colon Smooth Muscle	Colon
19	chr6:88031800-88033000	Active TSS	Fetal Intestine Large	intestine
20	chr6:88031800-88033000	Active TSS	Fetal Intestine Small	intestine
21	chr6:88031800-88033000	Active TSS	Ovary	ovary
22	chr6:88031800-88033000	Active TSS	Stomach Mucosa	stomach
23	chr6:88031800-88033000	Active TSS	NHDF-Ad	bronchial
24	chr6:88031800-88033000	Active TSS	NHLF	lung
25	chr6:88031800-88033200	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr6:88031800-88033200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:88031800-88033200	Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr6:88031800-88033200	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr6:88031800-88033200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:88031800-88033200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:88031800-88033200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:88031800-88033200	Active TSS	Brain Cingulate Gyrus	brain
33	chr6:88031800-88033200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:88031800-88033200	Active TSS	Fetal Kidney	kidney
35	chr6:88031800-88033200	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr6:88031800-88033200	Active TSS	Fetal Lung	lung
37	chr6:88031800-88033200	Active TSS	Right Atrium	heart
38	chr6:88031800-88033200	Active TSS	Right Ventricle	heart
39	chr6:88031800-88033200	Active TSS	HSMM	muscle
40	chr6:88031800-88033400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:88032000-88033000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:88032000-88033000	Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr6:88032000-88033000	Active TSS	Brain Hippocampus Middle	brain
44	chr6:88032000-88033000	Active TSS	Esophagus	oesophagus
45	chr6:88032000-88033000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr6:88032000-88033000	ZNF genes & repeats	Fetal Brain Male	brain
47	chr6:88032000-88033000	Active TSS	Fetal Heart	heart
48	chr6:88032000-88033000	Active TSS	Fetal Muscle Leg	muscle
49	chr6:88032000-88033000	Active TSS	Lung	lung
50	chr6:88032000-88033000	Active TSS	Rectal Smooth Muscle	rectum

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