Variant report

Variant	rs7620291
Chromosome Location	chr3:42813516-42813517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11129971	0.88[AFR][1000 genomes]
rs11129973	0.93[AFR][1000 genomes]
rs11708224	0.88[AFR][1000 genomes]
rs11720829	0.87[AFR][1000 genomes]
rs12488173	0.88[AFR][1000 genomes]
rs1564176	0.93[AFR][1000 genomes]
rs1564177	0.93[AFR][1000 genomes]
rs339663	0.88[AFR][1000 genomes]
rs339669	0.86[AFR][1000 genomes]
rs339673	0.86[AFR][1000 genomes]
rs339675	0.86[AFR][1000 genomes]
rs339679	0.81[AFR][1000 genomes]
rs35426298	0.87[AFR][1000 genomes]
rs4399859	0.87[AFR][1000 genomes]
rs4404423	0.90[AFR][1000 genomes]
rs4682855	0.88[AFR][1000 genomes]
rs4683331	0.88[AFR][1000 genomes]
rs5027058	0.87[AFR][1000 genomes]
rs6442065	0.88[AFR][1000 genomes]
rs6773636	0.88[AFR][1000 genomes]
rs6787667	0.88[AFR][1000 genomes]
rs7610350	0.81[AFR][1000 genomes]
rs7611520	0.84[AFR][1000 genomes]
rs7612614	0.88[AFR][1000 genomes]
rs7612782	0.81[AFR][1000 genomes]
rs7614158	0.87[AFR][1000 genomes]
rs7648688	0.84[AFR][1000 genomes]
rs9866005	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013578	chr3:42747858-42817321	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv999713	chr3:42749022-42817321	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv1846968	chr3:42787469-42832979	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42795600-42814000	Weak transcription	Gastric	stomach
2	chr3:42795600-42814400	Weak transcription	Aorta	Aorta
3	chr3:42803000-42814200	Weak transcription	Right Atrium	heart
4	chr3:42804200-42814200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:42805000-42813800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:42807400-42814000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:42808000-42814000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:42808000-42814200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:42811200-42814000	Weak transcription	Spleen	Spleen
10	chr3:42811600-42814200	Weak transcription	Lung	lung
11	chr3:42812200-42813800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:42812600-42813800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr3:42813000-42821400	Weak transcription	Dnd41	blood
14	chr3:42813000-42821800	Weak transcription	HepG2	liver
15	chr3:42813200-42813800	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr3:42813400-42813800	Enhancers	Primary B cells from cord blood	blood
17	chr3:42813400-42814200	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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