Variant report
| Variant | rs7622978 |
|---|---|
| Chromosome Location | chr3:144128494-144128495 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:144126513..144128962-chr3:144132805..144134458,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs13059486 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs16855401 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1725546 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2249820 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2569944 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2569948 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2569951 | 0.92[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2569953 | 0.92[EUR][1000 genomes] |
| rs2569954 | 0.85[EUR][1000 genomes] |
| rs2717372 | 0.84[EUR][1000 genomes] |
| rs2717374 | 0.85[EUR][1000 genomes] |
| rs2717399 | 0.82[EUR][1000 genomes] |
| rs2717400 | 0.83[EUR][1000 genomes] |
| rs2717401 | 0.83[EUR][1000 genomes] |
| rs61462134 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6440247 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6440252 | 0.80[AFR][1000 genomes] |
| rs6771442 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6803756 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9818367 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532633 | chr3:143802417-144440646 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011685 | chr3:143959237-144218424 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv536751 | chr3:143959237-144218424 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv591928 | chr3:144050897-144822081 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv591929 | chr3:144123401-144188561 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:144128400-144128600 | Enhancers | Cortex derived primary cultured neurospheres | brain |
