Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13059486	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1725546	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2249820	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2569944	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2569948	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2569951	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2569953	0.90[EUR][1000 genomes]
rs2569954	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2717372	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2717374	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2717399	0.81[EUR][1000 genomes]
rs2717400	0.81[EUR][1000 genomes]
rs2717401	0.84[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs61462134	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6440247	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6771442	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6803756	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7622978	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7649937	0.86[CHB][hapmap]
rs9818367	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv591929	chr3:144123401-144188561	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144126000-144126400	Enhancers	Fetal Heart	heart
2	chr3:144126000-144127400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:144126200-144127000	Enhancers	Brain Cingulate Gyrus	brain
4	chr3:144126200-144127200	Enhancers	Brain Substantia Nigra	brain
5	chr3:144126200-144127400	Enhancers	Brain Hippocampus Middle	brain

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