Variant report
| Variant | rs7623025 |
|---|---|
| Chromosome Location | chr3:86396577-86396578 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-VGLL3-8 | chr3:86396419-86396733 | l_2405_chr3:86337080-86399240_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10212461 | 0.85[EUR][1000 genomes] |
| rs10470568 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12106798 | 0.85[EUR][1000 genomes] |
| rs13322045 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17027586 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs28835355 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs60279733 | 0.80[EUR][1000 genomes] |
| rs6771192 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs871285 | 0.84[EUR][1000 genomes] |
| rs9310005 | 0.80[CEU][hapmap] |
| rs979472 | 0.83[EUR][1000 genomes] |
| rs9828471 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9832473 | 0.84[AMR][1000 genomes] |
| rs9835087 | 0.83[EUR][1000 genomes] |
| rs9846249 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs9856778 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs9863303 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv877115 | chr3:86278951-86554319 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv834753 | chr3:86386749-86546500 | Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
