Variant report

Variant	rs979472
Chromosome Location	chr3:86385842-86385843
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1170216	0.84[EUR][1000 genomes]
rs12494534	0.81[EUR][1000 genomes]
rs12631943	0.93[ASN][1000 genomes]
rs12714654	0.83[EUR][1000 genomes]
rs12714655	0.83[EUR][1000 genomes]
rs1495886	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1512913	0.83[EUR][1000 genomes]
rs1512918	0.83[EUR][1000 genomes]
rs2644216	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7623025	0.83[EUR][1000 genomes]
rs9310005	0.80[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9310006	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs932057	0.83[EUR][1000 genomes]
rs9835087	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9860570	0.83[EUR][1000 genomes]
rs9873692	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86377000-86390200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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