Variant report

Variant	rs2644216
Chromosome Location	chr3:86362717-86362718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1170216	0.83[EUR][1000 genomes]
rs12494534	0.82[EUR][1000 genomes]
rs12631943	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12714654	0.84[EUR][1000 genomes]
rs12714655	0.84[EUR][1000 genomes]
rs1495886	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512913	0.84[EUR][1000 genomes]
rs1512918	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9310005	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9310006	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs932057	0.84[EUR][1000 genomes]
rs979472	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9835087	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9860570	0.84[EUR][1000 genomes]
rs9873692	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86362400-86363000	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links