Variant report

Variant	rs12714654
Chromosome Location	chr3:86285714-86285715
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1170216	0.87[EUR][1000 genomes]
rs12494534	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631943	0.80[EUR][1000 genomes]
rs12714655	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495886	0.83[EUR][1000 genomes]
rs1512913	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512918	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1567734	0.94[EUR][1000 genomes]
rs2644216	0.84[EUR][1000 genomes]
rs6549086	0.94[EUR][1000 genomes]
rs6549088	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7625346	0.82[AFR][1000 genomes]
rs907714	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9310006	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs932057	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979472	0.83[EUR][1000 genomes]
rs9835087	0.83[EUR][1000 genomes]
rs9860570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873692	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv877114	chr3:86257272-86328961	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86283800-86287000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:86283800-86287000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:86284200-86286600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:86284600-86286000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:86284800-86285800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:86285000-86285800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:86285200-86286200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:86285400-86287000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:86285400-86289000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:86285600-86286600	Weak transcription	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links