Variant report

Variant	rs6549088
Chromosome Location	chr3:86312396-86312397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12494534	0.83[AMR][1000 genomes]
rs12714654	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12714655	0.82[EUR][1000 genomes]
rs1512913	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1512918	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs907714	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9310005	1.00[CEU][hapmap]
rs9310006	0.82[EUR][1000 genomes]
rs932057	0.82[EUR][1000 genomes]
rs9860570	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9879024	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877114	chr3:86257272-86328961	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86312000-86312800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:86312200-86312600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:86312200-86312600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:86312200-86312800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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