Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr3:86318426-86318999	HepG2	liver:	n/a	n/a
2	FOXA1	chr3:86318389-86319046	HepG2	liver:	n/a	n/a
3	SP1	chr3:86318393-86319005	HepG2	liver:	n/a	n/a
4	EP300	chr3:86318429-86319045	HepG2	liver:	n/a	n/a
5	HEY1	chr3:86318718-86318953	HepG2	liver:	n/a	n/a
6	NFIC	chr3:86318476-86319061	HepG2	liver:	n/a	n/a
7	ARID3A	chr3:86318438-86319020	HepG2	liver:	n/a	n/a
8	POLR2A	chr3:86318875-86318931	MCF10A-Er-Src	breast:	n/a	n/a
9	HNF4A	chr3:86318477-86318974	HepG2	liver:	n/a	n/a
10	FOXA1	chr3:86318429-86319091	HepG2	liver:	n/a	n/a
11	EP300	chr3:86318461-86318989	HepG2	liver:	n/a	n/a
12	RCOR1	chr3:86318560-86318927	HepG2	liver:	n/a	n/a
13	FOXA1	chr3:86318510-86319027	HepG2	liver:	n/a	n/a
14	MAX	chr3:86318425-86319048	HepG2	liver:	n/a	n/a
15	TEAD4	chr3:86318455-86318983	HepG2	liver:	n/a	n/a
16	CREB1	chr3:86318407-86318961	HepG2	liver:	n/a	n/a
17	HNF4A	chr3:86318508-86318953	HepG2	liver:	n/a	n/a
18	HDAC2	chr3:86318570-86318936	HepG2	liver:	n/a	n/a
19	MXI1	chr3:86318619-86318939	HepG2	liver:	n/a	n/a
20	FOXA1	chr3:86318495-86319022	HepG2	liver:	n/a	n/a
21	FOXA2	chr3:86318538-86318955	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000239767	TF binding region

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1170216	0.87[EUR][1000 genomes]
rs12494534	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12631943	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12714654	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12714655	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1495886	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1512913	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1567734	0.94[EUR][1000 genomes]
rs2644216	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6549086	0.94[EUR][1000 genomes]
rs6549088	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs907714	0.82[EUR][1000 genomes]
rs9310006	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs932057	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs979472	0.83[EUR][1000 genomes]
rs9835087	0.83[EUR][1000 genomes]
rs9860570	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9873692	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877114	chr3:86257272-86328961	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86318600-86319400	Flanking Active TSS	HepG2	liver
2	chr3:86318800-86319400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:86318800-86320800	Enhancers	Cortex derived primary cultured neurospheres	brain

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